HuBMAP-wide data products contain consolidated data for all datasets of a particular assay type and tissue, across all datasets, assay variants, and data providers. RNA-seq data products are added as both raw and processed versions: 'raw' features gene expression count matrices from the HuBMAP RNA-seq pipeline, and 'processed' versions are the results of secondary analysis (normalization, filtering, dimensionality reduction, clustering) applied to the raw matrix.
| Tissue Type | Creation Time | Assay Type | Number of Datasets | Total Raw Cells | Number Raw Cell Types | Total Processed Cells | Number Processed Cell Types | Raw Data Product Download | Processed Data Product Download | Shiny App | (All Versions) |
|---|---|---|---|---|---|---|---|---|---|---|---|
Large Intestine |
June 25, 2025, 3:17 p.m. | rna-seq | 45 | 172947 | NA | 96278 | NA | Raw H5AD | Processed H5AD | Shiny App | All versions of Large Intestine |
|
Large Intestine |
June 16, 2025, 3:09 p.m. | codex | 66 | 922074 | NA | 0 | NA | Raw H5AD | NA | All versions of Large Intestine | |
|
Large Intestine |
May 12, 2025, 2:40 p.m. | rna-seq | 45 | 172947 | NA | 96278 | NA | Raw H5AD | Processed H5AD | Shiny App | All versions of Large Intestine |
|
Large Intestine |
Oct. 7, 2024, 3 p.m. | atac | 38 | 258178 | NA | 0 | NA | Raw h5mu | NA | All versions of Large Intestine |